Logo image
Sequence-Subset Distance and Coding for Error Control for DNA-based Data Storage
Conference proceeding

Sequence-Subset Distance and Coding for Error Control for DNA-based Data Storage

Wentu Song, Kui Cai, Kees A. Schouhamer Immink and IEEE
2019 IEEE INTERNATIONAL SYMPOSIUM ON INFORMATION THEORY (ISIT), Vol.2019-, pp.86-90
IEEE International Symposium on Information Theory
01/01/2019

Abstract

Computer Science Computer Science, Information Systems Computer Science, Theory & Methods Science & Technology Technology
We introduce a new metric, termed sequence-subset distance, and a new family of codes with respect to this new metric, termed sequence-subset codes, on the power set of the set of all sequences of the same length over a finite alphabet. This new metric and family of codes are motivated by the problem of designing error correcting codes for DNA-based data storage, which can be mathematically modelled as a communication channel whose inputs and outputs are sets of unordered sequences. We derive some upper bounds on the size of the sequence-subset codes including a tight bound for a special case and a Singletonlike bound, and present some constructions of such codes.

Metrics

1 Record Views

Details

Logo image